Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015813549.1_cds_XP_016497588.1_11703
CDS Infomation

[gene=LOC107816390] [db_xref=GeneID:107816390] [protein=aspartic proteinase nepenthesin-1-like isoform X2] [protein_id=XP_016497588.1] [location=join(56995..58049,58496..58799)] [gbkey=CDS]
Sequence

ATGGCTTCATCAAACTTTGCCAATTTCACCATGTTTCTTTCTATATCAGTCTTGTTTGTT
AATGTTCTGCCAGTGAATTCAACATCAAGGCATGCTCTGATCAACAACCATAAGGGATTC
AAGGTGAGTCTAAAACATGTTGACTCAGGTGGGAATTTCACCAAATTCGAGCGTTTACAA
CGTGCGATGGCACGAGGAAAATCAAGACTTCAAAGGTTAAACCTAATGGCTAATAATTTG
GCAGCAACAACAGCCAAAGATGACTCTAATAATGTAAAGTCTACAATCCATGCAGGAAAT
GGTGAGTTTCTCATGCAAATATCCATTGGCAGCCCAAGTGAAACCTATAATGCTATAATG
GATACAGGAAGTGACTTAATTTGGACTCAATGCAAGCCTTGTAAAGAGTGTTTTGATCAA
TCCACACCTATTTTTGATCCATCAAAATCATCCACTTTTTCCAAGATTTCATGTTCTAAC
AAACTTTGTGAAGCATTGCCAATGTCATCTTGTGGGGATAGTAGCTGTGAATATATGTAC
ACATATGGTGATTATTCATCAAGTGAAGGTTTTTTAGCTAGTGAAACATTCACTTTTGGC
AAAACTTCCATTCCAAATGTTGCATTTGGATGTGGAAATGACAATGAAGGCAGTGGATTT
AGTCAAGGTGCAGGTCTAGTTGGGCTAGGGAGAGGTCCATTATCACTTGTTTCTCAACTC
CAAATGCCTAAATTTTCCTATTGTTTAACCTCTATTAATGATGATGCTAATAGCAAAATT
AGCAGCGCACTACTTATGGGATCAGTGGCAAATGATGATTATTCCAATATAATCACAACC
CCATTAGCGAAAAATCCTTCACAACCATCTTTTTATTATCTTTCCTTAGAAGGAATATCT
GTGGGAGACACTCGATTGCCTATCAAGAAATCCACATTTTCACTCAACCAAGATGGCAGT
GGAGGAGTAATAATAGACTCTGGGACAACCATAACATACTTAGAAGAAGGTGCATTTAAA
CTTCTCAAGAAAGAGTTCTCTTCACAGGTAAATTGTGCAGATAAACTTCCAGTGGATGAC
TCTAGCTCAACAGGACTGGATTTATGCTTCACTTTGCCTTCAAACACAAACAATATAGAG
GTTCCAAAATTGGTTTTCCATTTTGAAGGTGCAGACTTGGATTTGCCTGCTGACAATTAC
ATGATTGCTGATTCAAGTATGGGAGTTGCTTGTTTGGCCATGGGAAGTTCAAGTGGAATG
TCCATTTTTGGAAATGTTCAACAACAAAATATGCTTGTGATTCATGATCTTGATAAGGAG
ACTTTATCATTTGTACCAACACAATGTGATAAACTGTAG

Peptide Sequence

PEP ID

XP_016497588.1
PEP Infomation

PREDICTED: aspartic proteinase nepenthesin-1-like isoform X2 [Nicotiana tabacum]
Sequence

MASSNFANFTMFLSISVLFVNVLPVNSTSRHALINNHKGFKVSLKHVDSGGNFTKFERLQ
RAMARGKSRLQRLNLMANNLAATTAKDDSNNVKSTIHAGNGEFLMQISIGSPSETYNAIM
DTGSDLIWTQCKPCKECFDQSTPIFDPSKSSTFSKISCSNKLCEALPMSSCGDSSCEYMY
TYGDYSSSEGFLASETFTFGKTSIPNVAFGCGNDNEGSGFSQGAGLVGLGRGPLSLVSQL
QMPKFSYCLTSINDDANSKISSALLMGSVANDDYSNIITTPLAKNPSQPSFYYLSLEGIS
VGDTRLPIKKSTFSLNQDGSGGVIIDSGTTITYLEEGAFKLLKKEFSSQVNCADKLPVDD
SSSTGLDLCFTLPSNTNNIEVPKLVFHFEGADLDLPADNYMIADSSMGVACLAMGSSSGM
SIFGNVQQQNMLVIHDLDKETLSFVPTQCDKL

Transcript Sequence

Gene sequence data has not been registered.